PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 410aa    MW: 46742.6 Da    PI: 5.885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111936.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012528223
                    EETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                    +C+ C+k F++ s+Lk H ++  H
  XP_010111936.1  5 TCNACNKEFTDDSELKLHYKSewH 28
                    7*****************998666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004518.4E-4135IPR003604Zinc finger, U1-type
SuperFamilySSF576671.7E-7336No hitNo description
PROSITE profilePS501579.598428IPR007087Zinc finger, C2H2
SMARTSM003558.1428IPR015880Zinc finger, C2H2-like
PfamPF121713.2E-5529IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280628IPR007087Zinc finger, C2H2
PROSITE profilePS501578.8086897IPR007087Zinc finger, C2H2
PfamPF128740.0176892No hitNo description
SMARTSM003550.756892IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807092IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-7174289No hitNo description
SMARTSM00355300187210IPR015880Zinc finger, C2H2-like
PfamPF127561.9E-26189291IPR015880Zinc finger, C2H2-like
SMARTSM0035512238265IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MPGLTCNACN KEFTDDSELK LHYKSEWHRY NLKRKVADVP GVTEALFLTR QSALAQEKNK  60
LSETPMLYSC GLCGKGYRSS KAHAQHLQSR SHITRASHGT NHEDEERAII KPLPRRVANK  120
VPPQKEVESE ESEDSEDEWV EVDPEEEFLG EATKSLTGLN VNEQGQQASE DDMDEDDDDK  180
YEGLDPSCCF MCDLEHDTIE SCMVHMHKQH GFFIPDVEYL KDPKGLLTYL GLKIKRDFMC  240
LYCNDRRHPF SSLEAVRKHM VAKSHCKVHY GDGNDEEEVE LEEFYDYSSS YTNEDGKQLV  300
ALGDAVELVG SELVITERSS TRISTKTIGS REFLRYYRQK PRPSPVGDMA ITASLASRYR  360
SMGLATVQSR EQMVRMKVMK AMNRSGVEAM RTKIGMKSNV IRNLPKNVPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5apo_y1e-20189386164378CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102859.10.0Zinc finger protein
RefseqXP_010111936.10.0Zinc finger protein
SwissprotQ8H1G50.0REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBLW9SHD60.0W9SHD6_9R
STRINGGLYMA17G29490.10.0(Glycine max)